Publications from the Laboratory of Biophysics | University of Tartu Institute of Physics

Contacts of UT units

Faculty of Arts and Humanities
Faculty phone: 
+372 737 5341
Faculty address: 
Jakobi 2, rooms 116–121, 51005 Tartu
  • Dean's Office
    Faculty phone: 
    + 372 737 5341
    Faculty address: 
    Jakobi 2, rooms 116–121, 51005 Tartu
  • Institute of History and Archaeology
    Faculty phone: 
    +372 737 5651
    Faculty address: 
    Jakobi 2, 51005 Tartu
  • Institute of Estonian and General Linguistics
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    Faculty address: 
    Jakobi 2, 51005 Tartu
  • Institute of Philosophy and Semiotics
    Faculty phone: 
    +372 737 5314
    Faculty address: 
    Jakobi 2, rooms 309–352, 51005 Tartu
  • Institute of Cultural Research
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    (+372) 737 5223
    Faculty address: 
    Ülikooli 16, 51003 Tartu
  • School of Theology and Religious Studies
    Faculty phone: 
    +372 737 5301
    Faculty address: 
    Ülikooli 18–310, 50090 Tartu
  • College of Foreign Languages and Cultures
    Faculty address: 
    Lossi 3, 51003 Tartu
  • Viljandi Culture Academy
    Faculty phone: 
    +372 435 5232
    Faculty address: 
    Posti 1, 71004 Viljandi
Faculty of Social Sciences
Faculty phone: 
+372 737 5957
Faculty address: 
Lossi 36, 51003 Tartu
  • Dean's Office
    Faculty phone: 
    + 372 737 5900
    Faculty address: 
    Lossi 36, 51003 Tartu
  • Institute of Education
    Faculty phone: 
    +372 737 6440
    Faculty address: 
    Salme 1a–29, 50103 Tartu
  • Johan Skytte Institute of Political Studies
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    +372 737 5582
    Faculty address: 
    Lossi 36–301, 51003 Tartu
  • School of Economics and Business Administration
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    +372 737 6310
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Institute of Psychology
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    Faculty address: 
    Näituse 2, 50409 Tartu
  • School of Law
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    +372 737 5390
    Faculty address: 
    Näituse 20–324, 50409 Tartu
  • Institute of Social Studies
    Faculty phone: 
    +372 737 5188
    Faculty address: 
    Lossi 36, 51003 Tartu
  • Narva College
    Faculty phone: 
    +372 740 1900
    Faculty address: 
    Raekoja plats 2, 20307 Narva
  • Pärnu College
    Faculty phone: 
    +372 445 0520
    Faculty address: 
    Ringi 35, 80012 Pärnu
Faculty of Medicine
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+372 737 5326
Faculty address: 
Ravila 19, 50411 Tartu
  • Dean's Office
    Faculty phone: 
    +372 737 5326
    Faculty address: 
    Ravila 19, 50411 Tartu
  • Institute of Biomedicine and Translational Medicine
    Faculty phone: 
    +372 737 4210
    Faculty address: 
    Biomeedikum, Ravila 19, 50411 Tartu
  • Institute of Pharmacy
    Faculty phone: 
    +372 737 5286
    Faculty address: 
    Nooruse 1, 50411 Tartu
  • Institute of Dentistry
    Faculty phone: 
    +372 731 9856
    Faculty address: 
    Raekoja plats 6, 51003 Tartu
  • Institute of Clinical Medicine
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    +372 737 5323
    Faculty address: 
    L. Puusepa 8, 50406 Tartu
  • Institute of Family Medicine and Public Health
    Faculty phone: 
    +372 737 4190
    Faculty address: 
    Ravila 19, 50411 Tartu
  • Institute of Sport Sciences and Physiotherapy
    Faculty phone: 
    +372 737 5360
    Faculty address: 
    Jakobi 5–205, 51005 Tartu
Faculty of Science and Technology
Faculty phone: 
+372 737 5820
Faculty address: 
Vanemuise 46–208, 51014 Tartu
  • Dean's Office
    Faculty phone: 
    +372 737 5820
    Faculty address: 
    Vanemuise 46–208, 51005 Tartu
  • Institute of Computer Science
    Faculty phone: 
    +372 737 5445
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Estonian Marine Institute
    Faculty phone: 
    +372 671 8902
    Faculty address: 
    Mäealuse 14, 12618 Tallinn
  • Institute of Physics
    Faculty address: 
    W. Ostwaldi 1, 50411 Tartu
  • Institute of Chemistry
    Faculty phone: 
    +372 737 5261
    Faculty address: 
    Ravila 14a, 50411 Tartu
  • Institute of Mathematics and Statistics
    Faculty phone: 
    +372 737 5860
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Institute of Molecular and Cell Biology
    Faculty phone: 
    +372 737 5027
    Faculty address: 
    Riia 23, 23b–134, 51010 Tartu
  • Tartu Observatory
    Faculty phone: 
    +372 737 4510
    Faculty address: 
    Observatooriumi 1, Tõravere, 61602 Tartumaa
  • Institute of Technology
    Faculty phone: 
    +372 737 4800
    Faculty address: 
    Nooruse 1, 50411 Tartu
  • Institute of Ecology and Earth Sciences
    Faculty phone: 
    +372 737 5835
    Faculty address: 
    Vanemuise 46, 51003 Tartu
Institutions
  • Library
    Faculty phone: 
    +372 737 5702
    Faculty address: 
    W. Struve 1, 50091 Tartu
  • Youth Academy
    Faculty phone: 
    +372 737 5581
    Faculty address: 
    Uppsala 10, 51003 Tartu
  • Institute of Genomics
    Faculty phone: 
    +372 737 4000
    Faculty address: 
    Riia 23b, 51010 Tartu
  • Museum
    Faculty phone: 
    +372 737 5674
    Faculty address: 
    Lossi 25, 51003 Tartu
  • University of Tartu Natural History Museum and Botanical Garden
    Faculty phone: 
    +372 737 6076
    Faculty address: 
    Vanemuise 46, 51003 Tartu
Support Units
  • Administrative Office
    Faculty phone: 
    +372 737 5606
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Centre for Entrepreneurship and Innovation
    Faculty phone: 
    +372 737 6339
    Faculty address: 
    Lossi 3, III floor, 51003 Tartu
  • University Office in Tallinn
    Faculty phone: 
    +372 737 6600
    Faculty address: 
    Teatri väljak 3, 10143 Tallinn
  • Estates Office
    Faculty phone: 
    +372 737 5137
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Finance Office
    Faculty phone: 
    +372 737 5125
    Faculty address: 
    Jakobi 4, 51005 Tartu
  • Grant Office
    Faculty phone: 
    +372 737 6215
    Faculty address: 
    Lossi 3, III floor, 51003 Tartu
  • Information Technology Office
    Faculty phone: 
    +372 737 6000, IT-help: +372 737 5500
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Human Resources Office
    Faculty phone: 
    +372 737 5145
    Faculty address: 
    Ülikooli 18, rooms 302 and 304, 50090 Tartu
  • Internal Audit Office
    Faculty address: 
    Ülikooli 18-244, 51005 Tartu
  • Marketing and Communication Office
    Faculty phone: 
    +372 737 5687
    Faculty address: 
    Ülikooli 18, rooms 102, 104, 209, 210, 50090 Tartu
  • Office of Academic Affairs
    Faculty phone: 
    +372 737 5620
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • Procurement Office
    Faculty phone: 
    +372 737 6632
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Rector's Strategy Office
    Faculty phone: 
    +372 737 5600
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • Student Council
    Faculty address: 
    Ülikooli 18b, 51005 Tartu
  • University of Tartu Press
    Faculty phone: 
    +372 737 5945
    Faculty address: 
    W. Struve 1, 50091 Tartu
Other Units
  • University of Tartu Academic Sports Club
    Faculty phone: 
    +372 737 5371
    Faculty address: 
    Ujula 4, 51008 Tartu
  • Tartu Student Village
    Faculty phone: 
    +372 740 9959
    Faculty address: 
    Narva mnt 25, 51013 Tartu
  • Tartu Students’ Club
    Faculty phone: 
    +372 730 2400
    Faculty address: 
    Kalevi 24, 51010 Tartu
  • Tartu University Hospital
    Faculty address: 
    L. Puusepa 1a, 50406 Tartu
  • University of Tartu Foundation
    Faculty phone: 
    +372 737 5852
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • View all other units

Contacts of UT units

Faculty of Arts and Humanities
Faculty phone: 
+372 737 5341
Faculty address: 
Jakobi 2, rooms 116–121, 51005 Tartu
  • Dean's Office
    Faculty phone: 
    + 372 737 5341
    Faculty address: 
    Jakobi 2, rooms 116–121, 51005 Tartu
  • Institute of History and Archaeology
    Faculty phone: 
    +372 737 5651
    Faculty address: 
    Jakobi 2, 51005 Tartu
  • Institute of Estonian and General Linguistics
    Faculty phone: 
    +372 737 5221
    Faculty address: 
    Jakobi 2, 51005 Tartu
  • Institute of Philosophy and Semiotics
    Faculty phone: 
    +372 737 5314
    Faculty address: 
    Jakobi 2, rooms 309–352, 51005 Tartu
  • Institute of Cultural Research
    Faculty phone: 
    (+372) 737 5223
    Faculty address: 
    Ülikooli 16, 51003 Tartu
  • School of Theology and Religious Studies
    Faculty phone: 
    +372 737 5301
    Faculty address: 
    Ülikooli 18–310, 50090 Tartu
  • College of Foreign Languages and Cultures
    Faculty address: 
    Lossi 3, 51003 Tartu
  • Viljandi Culture Academy
    Faculty phone: 
    +372 435 5232
    Faculty address: 
    Posti 1, 71004 Viljandi
Faculty of Social Sciences
Faculty phone: 
+372 737 5957
Faculty address: 
Lossi 36, 51003 Tartu
  • Dean's Office
    Faculty phone: 
    + 372 737 5900
    Faculty address: 
    Lossi 36, 51003 Tartu
  • Institute of Education
    Faculty phone: 
    +372 737 6440
    Faculty address: 
    Salme 1a–29, 50103 Tartu
  • Johan Skytte Institute of Political Studies
    Faculty phone: 
    +372 737 5582
    Faculty address: 
    Lossi 36–301, 51003 Tartu
  • School of Economics and Business Administration
    Faculty phone: 
    +372 737 6310
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Institute of Psychology
    Faculty phone: 
    +372 737 5902
    Faculty address: 
    Näituse 2, 50409 Tartu
  • School of Law
    Faculty phone: 
    +372 737 5390
    Faculty address: 
    Näituse 20–324, 50409 Tartu
  • Institute of Social Studies
    Faculty phone: 
    +372 737 5188
    Faculty address: 
    Lossi 36, 51003 Tartu
  • Narva College
    Faculty phone: 
    +372 740 1900
    Faculty address: 
    Raekoja plats 2, 20307 Narva
  • Pärnu College
    Faculty phone: 
    +372 445 0520
    Faculty address: 
    Ringi 35, 80012 Pärnu
Faculty of Medicine
Faculty phone: 
+372 737 5326
Faculty address: 
Ravila 19, 50411 Tartu
  • Dean's Office
    Faculty phone: 
    +372 737 5326
    Faculty address: 
    Ravila 19, 50411 Tartu
  • Institute of Biomedicine and Translational Medicine
    Faculty phone: 
    +372 737 4210
    Faculty address: 
    Biomeedikum, Ravila 19, 50411 Tartu
  • Institute of Pharmacy
    Faculty phone: 
    +372 737 5286
    Faculty address: 
    Nooruse 1, 50411 Tartu
  • Institute of Dentistry
    Faculty phone: 
    +372 731 9856
    Faculty address: 
    Raekoja plats 6, 51003 Tartu
  • Institute of Clinical Medicine
    Faculty phone: 
    +372 737 5323
    Faculty address: 
    L. Puusepa 8, 50406 Tartu
  • Institute of Family Medicine and Public Health
    Faculty phone: 
    +372 737 4190
    Faculty address: 
    Ravila 19, 50411 Tartu
  • Institute of Sport Sciences and Physiotherapy
    Faculty phone: 
    +372 737 5360
    Faculty address: 
    Jakobi 5–205, 51005 Tartu
Faculty of Science and Technology
Faculty phone: 
+372 737 5820
Faculty address: 
Vanemuise 46–208, 51014 Tartu
  • Dean's Office
    Faculty phone: 
    +372 737 5820
    Faculty address: 
    Vanemuise 46–208, 51005 Tartu
  • Institute of Computer Science
    Faculty phone: 
    +372 737 5445
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Estonian Marine Institute
    Faculty phone: 
    +372 671 8902
    Faculty address: 
    Mäealuse 14, 12618 Tallinn
  • Institute of Physics
    Faculty address: 
    W. Ostwaldi 1, 50411 Tartu
  • Institute of Chemistry
    Faculty phone: 
    +372 737 5261
    Faculty address: 
    Ravila 14a, 50411 Tartu
  • Institute of Mathematics and Statistics
    Faculty phone: 
    +372 737 5860
    Faculty address: 
    Narva mnt 18, 51009 Tartu
  • Institute of Molecular and Cell Biology
    Faculty phone: 
    +372 737 5027
    Faculty address: 
    Riia 23, 23b–134, 51010 Tartu
  • Tartu Observatory
    Faculty phone: 
    +372 737 4510
    Faculty address: 
    Observatooriumi 1, Tõravere, 61602 Tartumaa
  • Institute of Technology
    Faculty phone: 
    +372 737 4800
    Faculty address: 
    Nooruse 1, 50411 Tartu
  • Institute of Ecology and Earth Sciences
    Faculty phone: 
    +372 737 5835
    Faculty address: 
    Vanemuise 46, 51003 Tartu
Institutions
  • Library
    Faculty phone: 
    +372 737 5702
    Faculty address: 
    W. Struve 1, 50091 Tartu
  • Youth Academy
    Faculty phone: 
    +372 737 5581
    Faculty address: 
    Uppsala 10, 51003 Tartu
  • Institute of Genomics
    Faculty phone: 
    +372 737 4000
    Faculty address: 
    Riia 23b, 51010 Tartu
  • Museum
    Faculty phone: 
    +372 737 5674
    Faculty address: 
    Lossi 25, 51003 Tartu
  • University of Tartu Natural History Museum and Botanical Garden
    Faculty phone: 
    +372 737 6076
    Faculty address: 
    Vanemuise 46, 51003 Tartu
Support Units
  • Administrative Office
    Faculty phone: 
    +372 737 5606
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Centre for Entrepreneurship and Innovation
    Faculty phone: 
    +372 737 6339
    Faculty address: 
    Lossi 3, III floor, 51003 Tartu
  • University Office in Tallinn
    Faculty phone: 
    +372 737 6600
    Faculty address: 
    Teatri väljak 3, 10143 Tallinn
  • Estates Office
    Faculty phone: 
    +372 737 5137
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Finance Office
    Faculty phone: 
    +372 737 5125
    Faculty address: 
    Jakobi 4, 51005 Tartu
  • Grant Office
    Faculty phone: 
    +372 737 6215
    Faculty address: 
    Lossi 3, III floor, 51003 Tartu
  • Information Technology Office
    Faculty phone: 
    +372 737 6000, IT-help: +372 737 5500
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Human Resources Office
    Faculty phone: 
    +372 737 5145
    Faculty address: 
    Ülikooli 18, rooms 302 and 304, 50090 Tartu
  • Internal Audit Office
    Faculty address: 
    Ülikooli 18-244, 51005 Tartu
  • Marketing and Communication Office
    Faculty phone: 
    +372 737 5687
    Faculty address: 
    Ülikooli 18, rooms 102, 104, 209, 210, 50090 Tartu
  • Office of Academic Affairs
    Faculty phone: 
    +372 737 5620
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • Procurement Office
    Faculty phone: 
    +372 737 6632
    Faculty address: 
    Ülikooli 18a, 51005 Tartu
  • Rector's Strategy Office
    Faculty phone: 
    +372 737 5600
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • Student Council
    Faculty address: 
    Ülikooli 18b, 51005 Tartu
  • University of Tartu Press
    Faculty phone: 
    +372 737 5945
    Faculty address: 
    W. Struve 1, 50091 Tartu
Other Units
  • University of Tartu Academic Sports Club
    Faculty phone: 
    +372 737 5371
    Faculty address: 
    Ujula 4, 51008 Tartu
  • Tartu Student Village
    Faculty phone: 
    +372 740 9959
    Faculty address: 
    Narva mnt 25, 51013 Tartu
  • Tartu Students’ Club
    Faculty phone: 
    +372 730 2400
    Faculty address: 
    Kalevi 24, 51010 Tartu
  • Tartu University Hospital
    Faculty address: 
    L. Puusepa 1a, 50406 Tartu
  • University of Tartu Foundation
    Faculty phone: 
    +372 737 5852
    Faculty address: 
    Ülikooli 18, 50090 Tartu
  • View all other units

Publications from the Laboratory of Biophysics

Publications from 2010 onwards

For the full list, see our main page at utbiophys.eu.

2020

  1. Jalviste, Erko; Timpmann, Kõu; Chenchiliyan, Manoop; Kangur, Liina; Jones, Michael R.; Freiberg, Arvi (2020). High-Pressure Modulation of Primary Photosynthetic Reactions. The Journal of Physical Chemistry B, 124 (5), 718−726.
  2. Timpmann, Kõu; Jalviste, Erko; Chenchiliyan, Manoop; Kangur, Liina; Jones, Michael R.; Freiberg, Arvi (2020). High-pressure tuning of primary photochemistry in bacterial photosynthesis: membrane-bound versus detergent-isolated reaction centers. Photosynthesis Research.
  3. Liina Kangur; Margus Rätsep; Kõu Timpmann; Zheng-Yu Wang-Otomo; Arvi Freiberg (2020), The two light-harvesting membrane chromoproteins of Thermochromatium tepidum expose distinct robustness against temperature and pressure, Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1861 (8), 148205.

2019

  1. Kangur, Liina; Timpmann, Kõu; Zeller, Dominik; Masson, Patrick; Peters, Judith; Freiberg, Arvi (2019). Structural stability of human butyrylcholinesterase under high hydrostatic pressure. Biochimica et Biophysica Acta - Proteins and Proteomics, 1867 (2), 107−113.
  2. Golub, M.; Pieper, J.; Peters, J.; Kangur, L.; Martin, E.C.; Hunter, C.N.; Freiberg, A. (2019). Picosecond Dynamical Response to a Pressure-Induced Break of the Tertiary Structure Hydrogen Bonds in a Membrane Chromoprotein. The Journal of Physical Chemistry B, 123, 2087−2093.
  3. Rätsep, Margus; Linnanto, Juha Matti; Freiberg, Arvi (2019). Higher Order Vibronic Sidebands of Chlorophyll a and Bacteriochlorophyll a for Enhanced Excitation Energy Transfer and Light Harvesting. The Journal of Physical Chemistry B, 123 (33), 7149−7156.
  4. Pajusalu, Mihkel; Ratsep, Margus; Kangur, Liina; Freiberg, Arvi (2019). High-pressure control of photosynthetic excitons. Chemical Physics, 525, UNSP 110404
  5. Leiger, Kristjan; Linnanto, Juha Matti; Ratsep, Margus; Timpmann, Kou; Ashikhmin, Aleksandr A.; Moskalenko, Andrey A.; Fufina, Tatiana Y.; Gabdulkhakov, Azat G.; Freiberg, Arvi (2019). Controlling Photosynthetic Excitons by Selective Pigment Photooxidation. The Journal of Physical Chemistry B, 123 (1), 29−38.
  6. Rätsep, Margus; Linnanto, Juha Matti; Muru, Renata; Biczysko, Malgorzata; Reimers, Jeffrey R.; Freiberg, Arvi (2019). Absorption-emission symmetry breaking and the different origins of vibrational structures of the 1Qy and 1Qx electronic transitions of pheophytin a. Journal of Chemical Physics, 151 (16), ARTN 165102.
  7. Golub, Maksym; Moldenhauer, Marcus; Schmitt, Franz-Josef; Feoktystov, Artem; Mändar, Hugo; Maksimov, Eugene; Friedrich, Thomas; Pieper, Jörg (2019). Solution Structure and Conformational Flexibility in the Active State of the Orange Carotenoid Protein: Part I. Small-Angle Scattering. The Journal of Physical Chemistry B, 123 (45), 9525−9535.
  8. Salvador-Castell, Marta; Golub, Maksym; Martinez, Nicolas; Ollivier, Jacques; Peters, Judith; Oger, Phil (2019). First study of osmolytes impact in whole cells of high temperature-adapted microrganisms. Soft Matter, 15 (41), 1−12.
  9. Golub, Maksym; Moldenhauer, Marcus; Schmitt, Franz-Josef; Lohstroh, Wiebke; Maksimov, Eugene; Friedrich, Thomas; Pieper, Jörg (2019). Solution Structure and Conformational Flexibility in the Active State of the Orange Carotenoid Protein: Part II: Quasielastic Neutron Scattering. The Journal of Physical Chemistry B, 1−32.
  10. Golub, M.; Guillon, V.; Gotthard, G.; Zeller, D.; Martinez, M.; Seydel, T.; Koza, M.; Lafaye, C.; Clavel, D.; Stetten, D.; Royant, A.; Peters, J. (2019). Dynamics of a family of cyan fluorescent proteins probed by incoherent neutron scattering. Journal of the Royal Society Interface, 16 (152), 1−10.

2018

  1. Pieper, Jörg; Artene, Petrica; Rätsep, Margus; Pajusalu, Mihkel; Freiberg, Arvi (2018). Evaluation of electron–phonon coupling and spectral densities of pigment–protein complexes by line-narrowed optical spectroscopy. The Journal of Physical Chemistry B, 122, 9289-9301.
  2. Rätsep, Margus; Muru, Renata; Freiberg, Arvi (2018). High temperature limit of photosynthetic excitons. Nature Communications, 9, 99.
  3. Freiberg, Arvi, Garab, Gyözö (2018). Basic optical spectroscopy for light harvesting. In: Roberta Croce, Rienk van Grondelle, Herbert van Amerongen, Ivo van Stokkum (Ed.). Light Harvesting in Photosynthesis (381−425). CRC Press.
  4. Golub, M.; Martines, N.; Michoud, G.; Ollivier, J.; Jebbar, M.; Oger, P.; Peters, J. (2018). The effect of crowding on protein stability, rigidity and high pressure sensitivity in whole cells. Langmuir, 34 (35), 10419−10425.
  5. Lehofer, B.; Golub, M.; Kornmueller, K.; Kriechbaum, M.; Martinez, N.; Nagy, G.; Kohlbrecher, J.; Amenitsch, H.; Peters, J.; Prassl, R. (2018). High Hydrostatic Pressure Induces a Lipid Phase Transition and Molecular Rearrangements in Low‐Density Lipoprotein Nanoparticles. Particle and Particle Systems Characterization, 35 (9).
  6. Golub, M.; Rusevich, L.;Irrgang K.-D.;Pieper, J. (2018). Rigid versus Flexible Protein Matrix: Light-Harvesting Complex II Exhibits a Temperature-Dependent Phonon Spectral Density. The Journal of Physical Chemistry B, 122 (28), 7111−7121.
  7. Peters, J.; Golub, M.; Demé, B.; Gonthier, J.; Maurice, J.; Payre, C.; Sadykov, R.; Lelièvre-Berna, E. (2018). New pressure cells for membrane layers and systems in solutions up to 100°C. Journal of Neutron Research, 20 (1-2), 1−10.

2017

  1. Kangur, Liina; Jones, Michael R.; Freiberg, Arvi (2017). Hydrogen bonds in the vicinity of the special pair of the bacterial reaction center probed by hydrostatic high-pressure absorption spectroscopy. Biophysical Chemistry, 231, 27−33.
  2. Rätsep, Margus; Timpmann, Kõu; Kawakami, Tomoaki; Wang-Otomo, Zheng-Yu; Freiberg, Arvi (2017). Spectrally selective spectroscopy of native Ca-containing and Ba-substituted LH1-RC core complexes from Thermochromatium tepidum. The Journal of Physical Chemistry B, 121, 10318-10326.
  3. Leiger, Kristjan; Linnanto, Juha Matti; Freiberg, Arvi (2017). Vibronic origin of the Qy absorption tail of bacteriochlorophyll a verified by fluorescence excitation spectroscopy and quantum chemical simulations. The Journal of Physical Chemistry Letters, 8, 4231-4235.
  4. Pieper, Jörg; Rätsep, Margus; Golub, Maxym; Schmitt, Franz-Josef; Artene, Petrica; Eckert, Hann-Jörg (2017). Excitation energy transfer in phycobiliproteins of the cyanobacterium Acaryochloris marina investigated by spectral hole burning. Photosynthesis Research, 133, 225-234.
  5. Timpmann, Kõu; Kangur, Liina; Lõhmus, Ants; Freiberg, Arvi (2017). High-pressure modulation of the structure of the bacterial photochemical reaction center at physiological and cryogenic temperatures. Journal of Physics B: Atomic, Molecular and Optical Physics, 50, 144006.
  6. Golub, M.; Combet, S.; Wieland, D.C.F.; Soloviov, D.; Kuklin, A.; Lokstein, H.; Schmitt, F.J.; Olliges, R.; Hecht, M.; Eckert, H.J.; Pieper, J. (2017). Solution structure and excitation energy transfer in phycobiliproteins of Acaryochloris marina investigated by small angle scattering. Biochimica et Biophysica Acta, 1858 (4), 318−324
  7. Golub, M.; Hejazi, M.; Koelsch, A.; Lokstein, H.; Wieland, D.C.F.; Zouni, A.; Pieper, J. (2017). Solution structure of monomeric and trimeric photosystem I of Thermosynechococcus elongatus investigated by small-angle X-ray scattering. Photosynthesis Research, 133(1-3),163-173.
  8. Ayoubi, S.; Schummel, P.H.; Golub, M.; Peters, J.; Winter, R. (2017). Influence of Cosolvents, Self-Crowding, Temperature and Pressure on the Sub-Nanosecond Dynamics and Folding Stability of Lysozyme. Physical Chemistry Chemical Physics, 1−8.
  9. Golub, M.; Lehofer, B.; Martines, N.; Olliver, J.; Kohlbrecher, J.; Prassl, R., Peters, J. (2017). High hydrostatic pressure specifically affects molecular dynamics and shape of low-density lipoprotein particles. Scientific Reports, 7, 1−11.

2016

  1. Freiberg, Arvi; Chenchiliyan, Manoop; Rätsep, Margus; Timpmann, Kõu (2016). Spectral and kinetic effects accompanying the assembly of core complexes of Rhodobacter sphaeroides. BBA-Bioenergetics 1857 (11), 1727-1733.
  2. Nielsen, Jakob Toudahl; Kulminskaya, Natalia V.; Bjerring, Morten; Linnanto, Juha M.; Rätsep, Margus; Pedersen, Marie Østergaard; Lambrev, Petar H.; Dorogi, Márta; Garab, Gyözö; Thomsen, Karen; Jegerschöld, Caroline; Frigaard, Niels-Ulrik; Lindahl, Martin; Nielsen, Niels Chr. (2016). In situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum. Nature Communications 7, 12454.
  3. Reimers, Jeffrey R.; Biczysko, Malgorzata; Bruce, Douglas; Coker, David F.; Frankcombe, Terry J.; Hashimoto, Hideki; Hauer, Jürgen; Jankowiak, Ryszard; Kramer, Tobias; Linnanto, Juha; Mamedov, Fikret; Müh, Frank; Rätsep, Margus; Renger, Thomas; Styring, Stenbjörn; Wan, Jian; Wang, Zhuan; Wang-Otomo, Zheng-Yu; Weng, Yu-Xiang; Yang, Chunhong; Zhang, Jian-Ping; Freiberg, Arvi; Krausz, Elmars (2016). Challenges facing an understanding of the nature of low-energy excited states in photosynthesis. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1857 (9), 1627-1640.
  4. Chenchiliyan, Manoop; Timpmann, Kõu; Jalviste, Erko; Adams, Peter G.; Hunter, C. Neil; Freiberg, Arvi (2016). Dimerization of core complexes as an efficient strategy for energy trapping in Rhodobacter sphaeroides. Biochem. Biophys. Acta - Bioenergetics 1857 (6), 634-642.

2015

  1. Pajusalu, Mihkel; Kunz, Ralf; Rätsep, Margus; Timpmann, Kõu; Köhler, Jürgen; Freiberg, Arvi (2015). Unified analysis of ensemble and single-complex optical spectral data from light-harvesting complex-2 chromoproteins for gaining deeper insight into bacterial photosynthesis. Phys. Rev. E 92(5), 052709-1 -  052709-12.
  2. Puusepp, Marit; Kangur, Liina; Freiberg, Arvi (2015). Dissociation of the light-harvesting membrane protein complex I from Rhodobacter sphaeroides under high hydrostatic pressure. High Pressure Research, 35(2), 176 -180.
  3. Vrandecic, Kamarniso; Rätsep, Margus; Wilk, Laura; Rusevich, Leonid; Golub, Maksym; Reppert, Mike; Irrgang, Klaus; Kühlbrandt, Werner; Pieper, Jörg (2015). Protein Dynamics Tunes Excited State Positions in Light-Harvesting Complex II. The Journal of Physical Chemistry B, 119(10), 3920 - 3930.
  4. Eek, P.; Piht, M.-A.; Rätsep, M.; Freiberg, A.; Järving, I.; Samel, N. (2015). A conserved π–cation and an electrostatic bridge are essential for 11R-lipoxygenase catalysis and structural stability. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1851(10), 1377 - 1382.
  5. Pieper, Jörg; Rusevich, Leonid; Hauß, Thomas; Renger, Gernot (2015). Lamellar spacing of photosystem II membrane fragments upon dehydration studied by neutron membrane diffraction. Optofluidics, Microfluidics and Nanofluidics, 36−40

2014

  1. Reimers, Jeffrey R: Cai, Zheng-Li; Kobayashi, Rika; Rätsep, Margus, Freiberg, Arvi; Krausz, Elmars (2014). Formation of water–chlorophyll clusters in dilute samples of chlorophyll-a in ether at low temperature. Physical Chemistry Chemical Physics, 16(6), 2323 - 2330.
  2. Kunz, Ralf; Timpmann, Kõu; Southall, June; Cogdell, Richard J; Freiberg, Arvi; Köhler, Jürgen (2014). Single-Molecule Spectroscopy Unmasks the Lowest Exciton State of the B850 Assembly in LH2 from Rps. acidophila. Biophysical Journal, 106, 2008 - 2016.
  3. Timpmann, Kõu; Chenchilian, Manoop; Jalviste, Erko; Timney, John A; Hunter, C. Neil; Freiberg, Arvi (2014). Efficiency of light harvesting in a photosynthetic bacterium adapted to different levels of light. Biochimica et Biophysica Acta-Bioenergetics, 1837(10), 1835 - 1846.
  4. Pajusalu, Mihkel; Rätsep, Margus; Freiberg, Arvi (2014). Temperature dependent electron–phonon coupling in chlorin-doped impurity glass and in photosynthetic FMO protein containing bacteriochlorophyll a. Journal of Luminescence, 152, 79 - 83.
  5. Rätsep, Margus; Pajusalu, Mihkel; Linnanto, Juha Matti; Freiberg, Arvi (2014). Subtle spectral effects accompanying the assembly of bacteriochlorophylls into cyclic light harvesting complexes revealed by high-resolution fluorescence spectroscopy. Journal of Chemical Physics, 141(15), 155102-1 - 155102-10.
  6. Linnanto, Juha-Matti (2014). Preface of the “Symposium on Progress in Computational Studies of Solar Light Harvesting - Computational Approaches to Biology”. AIP Conference Proceedings, 1618(12), 12 - 12.
  7. Reimers, Jeffrey R.; Cai, Zheng-Li; Kobayashi, Rika; Rätsep, Margus; Freiberg, Arvi (2014). The Role of High-Level Calculations in the Assignment of the Q-Band Spectra of Chlorophyll. AIP Conference Proceedings, 1618, 18 - 22.
  8. Linnanto, Juha-Matti; Freiberg, Arvi (2014). Computation Studies into Architecture and Energy Transfer Properties of Photosynthetic Units from Filamentous Anoxygenic Phototrophs. AIP Conference Proceedings, 1618, 23 - 26.
  9. Pieper, Jörg; Freiberg, Arvi (2014). Electron-phonon and exciton-phonon coupling in light harvesting. Insights from line-narrowing spectroscopies. Golbeck, John; van der Est, Art (Toim.). The Biophysics of Photosynthesis (45 - 78).Springer

 

2013

  1. Kunz, R.; Timpmann, K.; Southall, J.; Cogdell, R.J.; Köhler, J.; Freiberg, A. (2013). Fluorescence-Excitation and Emission Spectra from LH2 Antenna Complexes of Rhodopseudomonas acidophila as a Function of the Sample Preparation Conditions. Journal of Physical Chemistry B, 117(40), 12020 - 12029.
  2. Reimers, Jeffrey R.; Cai, Zheng-Li; Kobayashi, Rika; Rätsep, Margus; Freiberg, Arvi; Krausz, Elmars (2013). Assignment of the Q-bands of the chlorophylls: Coherence loss via Qx mixing. Scientific Reports, 3, 2761
  3. Kunz, Ralf; Timpmann, Kõu; Southall, June; Cogdell, Richard J.; Freiberg, Arvi; Köhler, Arvi (2013). Fluctuations in the electron-phonon coupling of a single chromoprotein. Angewandte Chemie International Edition, 52(33), 8726 - 8730.
  4. Leiger, Kristjan; Reisberg, Liis; Freiberg, Arvi (2013). Fluorescence Micro-Spectroscopy Study of Individual Photosynthetic Membrane Vesicles and Light-Harvesting Complexes. The Journal of Physical Chemistry B, 117(32), 9315 - 9326.
  5. Freiberg, A.; Pajusalu, M.; Rätsep, M. (2013). Excitons in intact cells of photosynthetic bacteria . The Journal of Physical Chemistry B, 117(38), 11007 - 11014.

 

2012

  1. Freiberg, Arvi; Kangur, Liina; Olsen, John; Hunter, Neil. (2012). Structural implications of hydrogen-bond energetics in membrane proteins revealed by high-pressure spectroscopy. Biophysical Journal, 2352 - 2360.
  2. Kunz, Ralf; Timpmann, K.; Southall, June; Cogdell, Richard J.; Freiberg, A.; Köhler, Jürgen (2012). Exciton Self Trapping in Photosynthetic Pigment−Protein Complexes Studied by Single-Molecule Spectroscopy. The Journal of Physical Chemistry B, 116(36), 11017 - 11023.
  3. Freiberg, Arvi; Rätsep, Margus; Timpmann, Kõu (2012). A Comparative Spectroscopic and Kinetic Study of Photoexcitations in Detergent-isolated and Membrane-embedded LH2 Light-harvesting Complexes. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1817(8), 1471 - 1482.
  4. Kangur, Liina; Olsen, John; Hunter, Neil; Freiberg, Arvi (2012). Estimating hydrogen bond energy in integral membrane chromoproteins by high hydrostatic pressure optical spectroscopy. Eshel Faragg (Toim.). Protein Structure (191 - 212).InTech - Open Access Publisher

 

2011

  1. Linnanto, J.; Freiberg, A.; Korppi-Tommola, J. (2011). Quantum Chemical Simulations of Excited-State Absorption Spectra of Photosynthetic Bacterial Reaction Center and Antenna Complexes. Journal of Physical Chemistry B, 115(18), 5336 - 5544.
  2. Pieper, J.; Rätsep, M.; Trostmann, I.; Schmitt, F.-J.; Theiss, C.; Paulsen, H.; Eichler, H.J.; Freiberg, A.; Renger, G. (2011). Excitonic Energy Level Structure and Pigment-Protein Interactions in the Recombinant Water-Soluble Chlorophyll Protein. II. Spectral Hole-Burning Experiments. Journal of Physical Chemistry B, 115(14), 4053 - 4065.
  3. Pieper, J.; Rätsep, M.; Trostmann, I.; Paulsen, H.; Renger, G.; Freiberg, A. (2011). Excitonic Energy Level Structure and Pigment-Protein Interactions in the Recombinant Water-Soluble Chlorophyll Protein. I. Difference Fluorescence Line-Narrowing. Journal of Physical Chemistry B, 115(14), 4042 - 4052.
  4. Pajusalu, M.; Rätsep, M.; Trinkunas, G.; Freiberg, A. (2011). Davydov splitting of excitons in cyclic bacteriochlorophyll a nanoaggregates of bacterial light-harvesting complexes between 4.5 and 263 K. ChemPhysChem, 12, 634 - 644.
  5. Renge, Indrek; Rätsep, Margus; Freiberg, Arvi (2011). Intermolecular repulsive–dispersive potentials explain properties of impurity spectra in soft solids. Journal of Luminescence, 131(2), 262 - 265.
  6. Rätsep, M.; Cai, Z.-L; Reimers, J.; Freiberg, A. (2011). Demonstration and interpretation of significant asymmetry in the low-resolution and high-resolution Qy fluorescence and absorption spectra of bacteriochlorophyll a. Journal of Chemical Physics, 134, 024506
  7. Freiberg, Arvi (2011). Klorofüll - füüsikat ja bioloogiat ühendav molekul. Teadusmõte Eestis (VI) Elu- ja Maateadused (73 - 83). Tallinn: Eesti Teaduste Akadeemia

 

2010

  1. Freiberg, A.; Timpmann, K.; Trinkunas, G. (2010). Spectral fine-tuning in excitonically coupled cyclic photosynthetic antennas. Chemical Physics Letters, 500(1-3), 111 - 115.
  2. Sener, M.; Strümpher, J.; Timney, J.; Freiberg, A.; Hunter, N.; Schulten, K. (2010). Photosynthetic vesicle architecture and constraints on efficient energy harvesting. Biophysical Journal, 99(1), 67 - 75.